PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.HK8E8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 114aa    MW: 13604.7 Da    PI: 9.2504
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.HK8E8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.2e-162870145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     rg+ T++E+e++v++++ lG++ W+ Ia +++ gRt +++k++w+
      Aradu.HK8E8 28 RGNITPQEEEIIVKLHAVLGNR-WSVIAGHLP-GRTYNEIKNYWN 70
                     8999******************.*********.***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.24E-171072IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-91134IPR009057Homeodomain-like
PROSITE profilePS5129421.0042377IPR017930Myb domain
SMARTSM007171.3E-132775IPR001005SANT/Myb domain
PfamPF002491.6E-132871IPR001005SANT/Myb domain
CDDcd001673.48E-93273No hitNo description
Gene3DG3DSA:1.10.10.605.6E-203571IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MEVVAQECWT LKSCRLRWIN YLRSDVKRGN ITPQEEEIIV KLHAVLGNRW SVIAGHLPGR  60
TYNEIKNYWN SRWIRRKIYC FMKSLNDYSS FPPTIDNCCI KSFQEKSTYS IYCT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-17127843108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016172314.12e-52PREDICTED: transcription factor MYB12
SwissprotO222647e-35MYB12_ARATH; Transcription factor MYB12
TrEMBLA0A0B2P2421e-43A0A0B2P242_GLYSO; Transcription factor MYB12
TrEMBLA0A0B2P5Q99e-44A0A0B2P5Q9_GLYSO; Transcription factor MYB12
TrEMBLK7L3L19e-44K7L3L1_SOYBN; Uncharacterized protein
TrEMBLK7MJQ11e-43K7MJQ1_SOYBN; Uncharacterized protein
STRINGGLYMA07G37142.13e-43(Glycine max)
STRINGGLYMA17G03480.23e-43(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.14e-36myb domain protein 12